PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003357.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ZF-HD
Protein Properties Length: 359aa    MW: 38999.7 Da    PI: 7.5499
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003357.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.96.7e-3563120359
                     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                                      v YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e+
  FANhyb_rscf00003357.1.g00001.1  63 VVSYKECLKNHAASLGGHALDGCGEFMPSPTSTpSDPTSLKCAACGCHRNFHRRDPED 120
                                     589*****************************99********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.0E-2964118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1864121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-3166117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.50666117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.19E-18192261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-30193261IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-25200257IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDIAPSITTT ASTKSPEADG DTPARIQPAK PISFSNGVLK RHNPTHHHHS HHHNSNIPVT  60
PVVVSYKECL KNHAASLGGH ALDGCGEFMP SPTSTPSDPT SLKCAACGCH RNFHRRDPED  120
NIPAVAPATH VIEYQPHHRH HPPPPLIGNR SPNSASPPPI SSSYYPSAPH MLLALSTGIS  180
DNPNNHHGGQ IVSPGGPNAR KRFRTKFSQE QKDKMFQFAE RVGWKMQKRD EDIVHEFCNE  240
IGVDKGVLKV WMHNNKNTFA KRDGVVSSGG GALNGISSTV TARIPNNTSL DDHLHNNMNG  300
NNNNNNTSND EEEEDDHPNN HHHNGGGSLS NIPNPNHHHY QVGRDHPHGV TNGGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-222012581875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304301.10.0PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG01e-78ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLF6H5T21e-100F6H5T2_VITVI; Putative uncharacterized protein
STRINGVIT_14s0108g00750.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-72homeobox protein 34